Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KX534340Phage Wrath2923834.766UnspecifiedGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedMedium-qualityGenome-fragment84.690AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_26
KX534341Escherichia phage Pride4489954.467EscherichiaGroup I DhillonvirusDhillonvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality100.000AAI-based (high-confidence) DhillonvirusDhillonvirus gluttonyCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX550065Streptococcus phage SpGS-13763138.280StreptococcusGroup I PaclarkvirusPaclarkvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus pneumoniae Rx1High-qualityHigh-quality97.330AAI-based (high-confidence) PaclarkvirusPaclarkvirus SpGS-1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6
KX550082Rhodococcus phage Natosaleda4652758.579RhodococcusGroup I RerduovirusRerduovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodococcus erythropolis RIA 643High-qualityHigh-quality98.870AAI-based (high-confidence) RerduovirusRerduovirus RER2The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_25;immunity orf_52
KX550441Mycobacterium phage LittleGuy5117863.899MycobacteriumGroup I BackyardiganvirusBackyardiganvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) BackyardiganvirusBackyardiganvirus iclearedCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_31;immunity orf_64
KX550442Mycobacterium phage Badger5127463.676MycobacteriumGroup I BackyardiganvirusBackyardiganvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) BackyardiganvirusBackyardiganvirus backyardiganCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_31;immunity orf_63
KX550443Mycobacterium phage Magnito5174363.819MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.650AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_34;immunity orf_66
KX552041Escherichia phage ESCO1314981339.125EscherichiaGroup I PhapecoctavirusPhapecoctavirusStephanstirmvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli BEN 4311High-qualityHigh-quality98.840AAI-based (high-confidence) PhapecoctavirusPhapecoctavirus ESCO13Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX555527Leuconostoc phage LDG2655936.274LeuconostocGroup I LimdunavirusLimdunavirusMccleskeyvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Leuconostoc pseudomesenteroides R707High-qualityHigh-quality98.900AAI-based (high-confidence) LimdunavirusLimdunavirus LDGCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX557234Mycobacterium phage Florean5137163.863MycobacteriumGroup I BackyardiganvirusBackyardiganvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) BackyardiganvirusBackyardiganvirus peachesCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_31;immunity orf_63
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