Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KX369584Mycobacterium phage Makemake5249663.761MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_37;immunity orf_73
KX369585Mycobacterium phage PhatCats20146900066.513MycobacteriumGroup I PegunavirusPegunavirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.310AAI-based (high-confidence) PegunavirusPegunavirus Pg1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX369586Mycobacterium phage Papez5250163.787MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_38;immunity orf_72
KX371613Vibrio phage VP74357748.998VibrioGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio parahaemolyticus HN-9High-qualityHigh-quality100.000AAI-based (high-confidence) MaculvirusMaculvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX371614Vibrio phage VP464312149.250VibrioGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio parahaemolyticus HN-9High-qualityHigh-quality99.420AAI-based (high-confidence) MaculvirusMaculvirus HA1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX371615Vibrio phage VP484328949.449VibrioGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio parahaemolyticus HN-9High-qualityHigh-quality99.810AAI-based (high-confidence) MaculvirusMaculvirus KF1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX373685Lactococcus phage D44102282535.706LactococcusGroup I CeduovirusCeduovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactis DGCC7271High-qualityHigh-quality100.000AAI-based (high-confidence) CeduovirusCeduovirus D4410Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX373686Lactococcus phage D44122288435.431LactococcusGroup I CeduovirusCeduovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactis DGCC7271High-qualityHigh-quality100.000AAI-based (high-confidence) CeduovirusCeduovirus D4412Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX373687Lactococcus phage M59382224035.863LactococcusGroup I CeduovirusCeduovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactis DGCC7271High-qualityHigh-quality100.000AAI-based (high-confidence) CeduovirusCeduovirus M5938Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX373688Lactococcus phage M61622169735.793LactococcusGroup I CeduovirusCeduovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactis DGCC11032High-qualityHigh-quality98.960AAI-based (high-confidence) CeduovirusCeduovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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