INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AY508486 | Staphylococcus phage 77 | 41708 | 33.533 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.730 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus bv77 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_22;cro orf_25;antirepressor orf_28;antirepressor orf_32;integrase orf_63 |
| AY510084 | Vibrio phage VP5 | 39786 | 50.485 | Vibrio | Group I | Enhodamvirus | Enhodamvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | High-quality | High-quality | 99.640 | AAI-based (high-confidence) | Enhodamvirus | Enhodamvirus VP5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY526908 | Bordetella phage BMP-1 | 42663 | 65.438 | Bordetella | Group I | Rauchvirus | Rauchvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rauchvirus | Rauchvirus BPP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_5;cro orf_31;integrase orf_50 |
| AY526909 | Bordetella phage BIP-1 | 42638 | 65.402 | Bordetella | Group I | Rauchvirus | Rauchvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | Rauchvirus | Rauchvirus BPP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_5;cro orf_31;integrase orf_50 |
| AY539836 | Burkholderia phage BcepMu | 36748 | 62.861 | Burkholderia | Group I | Bcepmuvirus | Bcepmuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.150 | AAI-based (high-confidence) | Bcepmuvirus | Bcepmuvirus bcepMu | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY543070 | Escherichia phage T5 | 121750 | 39.270 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus T5 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| AY569307 | Sulfolobus turreted icosahedral virus 1 | 17663 | 36.007 | Sulfolobus | Unclassified | Alphaturrivirus | Alphaturrivirus | Unclassified | Turriviridae | Belfryvirales | Belvinaviricetes | Produgelaviricota | Abadenavirae | Varidnaviria | Sulfolobus solfataricus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AY575774 | Pseudomonas phage PaP2 | 43783 | 45.365 | Pseudomonas | Group I | Jamesmcgillvirus | Jamesmcgillvirus | Unclassified | Fredfastierviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jamesmcgillvirus | Jamesmcgillvirus PaMx41 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY576273 | Alphaproteobacteria phage PhiJL001 | 63649 | 62.122 | Alphaproteobacteria | Group I | Keylargovirus | Keylargovirus | Unclassified | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Keylargovirus | Keylargovirus JL001 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_61 |
| AY576796 | Actinoplanes phage phiAsp2 | 58638 | 70.388 | Actinoplanes | Group I | Aspduovirus | Aspduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Aspduovirus | Aspduovirus Asp2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |