INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AY283928 | Vibrio phage KVP40 | 244834 | 42.599 | Vibrio | Group I | Schizotequatrovirus | Schizotequatrovirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 90.920 | AAI-based (high-confidence) | Schizotequatrovirus | Schizotequatrovirus KVP40 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY288927 | Salmonella phage SP6 | 43769 | 47.227 | Salmonella | Group I | Zindervirus | Zindervirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Zindervirus | Zindervirus SP6 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| AY299121 | Xanthomonas phage Xp10 | 44373 | 52.038 | Xanthomonas | Group I | Xipdecavirus | Xipdecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Xipdecavirus | Xipdecavirus Xp10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY303349 | Escherichia phage RB69 | 167560 | 37.656 | Escherichia | Group I | Mosigvirus | Mosigvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.750 | AAI-based (high-confidence) | Mosigvirus | Mosigvirus RB69 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY308796 | Escherichia phage Tls | 49902 | 42.680 | Escherichia | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.950 | AAI-based (high-confidence) | Tlsvirus | Tlsvirus TLS | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_21 |
| AY320035 | Streptomyces phage VWB | 49220 | 71.138 | Streptomyces | Group I | Veewebvirus | Veewebvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae ETH14630 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Veewebvirus | Veewebvirus vwb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| AY324828 | Primolicivirus Pf1 | 10675 | 57.255 | Unspecified | Group II | Primolicivirus | Primolicivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_16 |
| AY328852 | Vibrio phage VP16T | 49575 | 58.792 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AY328853 | Vibrio phage VP16C | 47537 | 59.377 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AY343333 | Escherichia phage RB49 | 164018 | 40.442 | Escherichia | Group I | Krischvirus | Krischvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.440 | AAI-based (high-confidence) | Krischvirus | Krischvirus RB49 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |