INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KU252585 | Gordonia phage Howe | 53182 | 65.601 | Gordonia | Group I | Howevirus | Howevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3621 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Howevirus | Howevirus howe | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_35;integrase orf_38;immunity orf_43;antirepressor orf_47 |
| KU253712 | Bacillus phage Eldridge | 165868 | 40.407 | Bacillus | Group I | Eldridgevirus | Eldridgevirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus megaterium | Complete | High-quality | 100.000 | DTR (high-confidence) | Eldridgevirus | Eldridgevirus eldridge | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU255188 | Mycobacterium phage JenCasNa | 50877 | 63.999 | Mycobacterium | Group I | Microwolfvirus | Microwolfvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Microwolfvirus | Microwolfvirus JHC117 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_69 |
| KU255730 | Escherichia phage phiE142 | 121442 | 37.355 | Escherichia | Group I | Carettavirus | Carettavirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Medium-quality | Genome-fragment | 71.850 | AAI-based (high-confidence) | Carettavirus | Carettavirus e142 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KU297675 | Pseudomonas phage PaoP5 | 93464 | 49.508 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU297783 | Mycobacterium phage NaSiaTalie | 52920 | 63.398 | Mycobacterium | Group I | Turbidovirus | Turbidovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Turbidovirus | Turbidovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_70 |
| KU298437 | Escherichia phage phiON-2011 | 60897 | 50.227 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O104:H4 strain ON-2011 | High-quality | High-quality | 92.360 | AAI-based (high-confidence) | Oslovirus | Oslovirus ov191 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_9;antirepressor orf_24;cro orf_27;cro orf_28;antirepressor orf_42;antirepressor orf_45 |
| KU310943 | Pseudomonas phage YMC11/07/P54_PAE_BP | 50183 | 62.180 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | carbapenem-resistant Pseudomonas aeruginosa YMC11/07/P54 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| KU310944 | Pseudomonas phage YMC11/06/C171_PPU_BP | 45417 | 60.354 | Pseudomonas | Group I | Kantovirus | Kantovirus | Corkvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas putida YMC11/06/C171 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kantovirus | Kantovirus C171 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU356689 | Pseudomonas phage ZC01 | 57061 | 63.381 | Pseudomonas | Group I | Abidjanvirus | Abidjanvirus | Bradleyvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 93.460 | AAI-based (high-confidence) | Abidjanvirus | Abidjanvirus ZC01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |