INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT970645 | Bacillus phage phi4J1 | 41486 | 35.889 | Bacillus | Group I | Rockvillevirus | Rockvillevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis 4J1 | High-quality | High-quality | 95.780 | AAI-based (high-confidence) | Rockvillevirus | Rockvillevirus phi4J1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_23;antirepressor orf_29 |
| KT970646 | Bacillus phage phiS58 | 46635 | 35.435 | Bacillus | Group I | Waukeshavirus | Waukeshavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus S58 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Waukeshavirus | Waukeshavirus waukesha92 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_18;antirepressor orf_37 |
| KT989433 | Streptomyces phage phiSAJS1 | 56451 | 68.330 | Streptomyces | Group I | Woodruffvirus | Woodruffvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces avermitilis ATCC 31267 | High-quality | High-quality | 93.330 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KT990215 | Escherichia phage GA2A | 40470 | 51.097 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O:45 strain C1328 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus GA2A | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KT990218 | Rhodococcus phage Lillie | 46596 | 58.550 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 99.020 | AAI-based (high-confidence) | Rerduovirus | Rerduovirus RER2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;immunity orf_53 |
| KT995480 | Bacillus phage BM15 | 165213 | 39.605 | Bacillus | Group I | Caeruleovirus | Caeruleovirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Priestia megaterium | Complete | High-quality | 100.000 | DTR (high-confidence) | Caeruleovirus | Caeruleovirus BM15 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT997847 | uncultured phage_Deep1-GF2-KM23-C739 | 33961 | 32.384 | Unspecified | Group I | Chosvirus | Chosvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 82.560 | AAI-based (high-confidence) | Chosvirus | Chosvirus KM23C739 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_13 |
| KU052037 | Escherichia phage Rac-SA53 | 52291 | 47.278 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli SA53 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_2 |
| KU052038 | Escherichia phage SerU-LTIIb | 10126 | 46.060 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 41 | Low-quality | Genome-fragment | 19.360 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KU052488 | Lactobacillus phage SA-C12 | 79099 | 37.491 | Lactobacillus | Group I | Lenusvirus | Lenusvirus | Tybeckvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus brevis SA-C12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lenusvirus | Lenusvirus SAC12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_3 |