INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT021004 | Thermobifida phage P1312 | 60284 | 65.906 | Thermobifida | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Thermobifida fusca NTU22 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_42;integrase orf_54 |
| KT070866 | Bacillus phage PBC4 | 80647 | 33.983 | Bacillus | Group I | Yihwangvirus | Yihwangvirus | Sejongvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | High-quality | High-quality | 99.010 | AAI-based (high-confidence) | Yihwangvirus | Yihwangvirus PBC4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_76 |
| KT070867 | Bacillus phage PBC2 | 168689 | 34.419 | Bacillus | Group I | Haetaevirus | Haetaevirus | Andregratiavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Haetaevirus | Haetaevirus PBC2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_214 |
| KT070868 | Bacillus phage PBC5 | 56332 | 40.256 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KT124227 | Streptomyces phage Aaronocolus | 49562 | 66.176 | Streptomyces | Group I | Likavirus | Likavirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus ATCC 10137 | High-quality | High-quality | 97.860 | AAI-based (high-confidence) | Likavirus | Likavirus aaronocolus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_28;integrase orf_46 |
| KT124228 | Streptomyces phage Danzina | 50773 | 65.667 | Streptomyces | Group I | Likavirus | Likavirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae ATCC 10712 | High-quality | High-quality | 99.650 | AAI-based (high-confidence) | Likavirus | Likavirus danzina | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_29;integrase orf_49 |
| KT124229 | Streptomyces phage Hydra | 50727 | 66.225 | Streptomyces | Group I | Likavirus | Likavirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus ATCC 10137 | High-quality | High-quality | 99.700 | AAI-based (high-confidence) | Likavirus | Likavirus hydra | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_30;integrase orf_47 |
| KT151955 | Brevibacillus phage Jenst | 126341 | 42.886 | Brevibacillus | Group I | Jenstvirus | Jenstvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brevibacillus laterosporus | Complete | High-quality | 100.000 | DTR (high-confidence) | Jenstvirus | Jenstvirus jenst | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT151956 | Brevibacillus phage Osiris | 52955 | 38.102 | Brevibacillus | Group I | Jimmervirus | Jimmervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brevibacillus laterosporus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jimmervirus | Jimmervirus osiris | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_20;antirepressor orf_71 |
| KT151957 | Brevibacillus phage SecTim467 | 130482 | 42.706 | Brevibacillus | Group I | Jenstvirus | Jenstvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brevibacillus laterosporus | Complete | High-quality | 100.000 | DTR (high-confidence) | Jenstvirus | Jenstvirus jenst | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |