INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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Genus (TaxMyPhage)

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KR902980	Propionibacterium phage PAC3	29526	54.027	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR902981	Propionibacterium phage PAC4	29581	54.041	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR902982	Propionibacterium phage PAC5	29428	54.169	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes	High-quality	High-quality	99.900	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR902983	Propionibacterium phage PAC6	29609	54.058	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR902984	Propionibacterium phage PAC7	29551	54.066	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR902985	Propionibacterium phage PAC8	29488	54.032	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR902986	Propionibacterium phage PAC9	29786	54.039	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR902987	Propionibacterium phage PAC10	29704	54.036	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Propionibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR905066	Lactobacillus phage CL1	39474	44.774	Lactobacillus	Group I	Colunavirus	Colunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus paracasei	High-quality	High-quality	100.000	AAI-based (high-confidence)	Colunavirus	Colunavirus CL1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_21;antirepressor orf_34;antirepressor orf_38
KR905067	Lactobacillus phage CL2	38751	44.879	Lactobacillus	Group I	Colunavirus	Colunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus paracasei	High-quality	High-quality	100.000	AAI-based (high-confidence)	Colunavirus	Colunavirus CL2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_23;antirepressor orf_29;antirepressor orf_32;cro orf_52