INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AP017903 | Azobacteroides phage ProJPt-Bp1 | 99517 | 42.309 | Azobacteroides | Group I | Dechshavirus | Dechshavirus | Unclassified | Suoliviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Azobacteroides pseudotrichonymphae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dechshavirus | Dechshavirus japanensis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_58 |
| AP017924 | Ralstonia phage RP12 | 279845 | 53.404 | Ralstonia | Group I | Ripduovirus | Ripduovirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ripduovirus | Ripduovirus RP12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_54 |
| AP017925 | Ralstonia phage RP31 | 276958 | 53.346 | Ralstonia | Group I | Ripduovirus | Ripduovirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 98.970 | AAI-based (high-confidence) | Ripduovirus | Ripduovirus RP12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AP017972 | Vibrio phage pTD1 | 239276 | 44.546 | Vibrio | Group I | Tidunavirus | Tidunavirus | Gorgonvirinae | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio Parahaemolyticus | High-quality | High-quality | 99.850 | AAI-based (high-confidence) | Tidunavirus | Tidunavirus pTD1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_148 |
| AP018361 | Lactobacillus phage T25 | 38421 | 44.541 | Lactobacillus | Group I | Sukhumvitvirus | Sukhumvitvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei | High-quality | High-quality | 95.800 | AAI-based (high-confidence) | Sukhumvitvirus | Sukhumvitvirus T25 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;antirepressor orf_35 |
| AP018375 | Staphylococcus phage phiSA039 | 141038 | 30.378 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | Kayvirus | Kayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AP018399 | Xanthomonas phage XacN1 | 384670 | 50.439 | Xanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas citri | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_172 |
| AP018462 | Mycobacterium phage D12 | 61290 | 67.605 | Mycobacterium | Group I | Northamptonvirus | Northamptonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.580 | AAI-based (high-confidence) | Northamptonvirus | Northamptonvirus taptic | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AP018463 | Mycobacterium phage PR | 61267 | 67.593 | Mycobacterium | Group I | Northamptonvirus | Northamptonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | Northamptonvirus | Northamptonvirus taptic | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AP018469 | Mycobacterium phage Y10 | 57990 | 67.882 | Mycobacterium | Group I | Fionnbharthvirus | Fionnbharthvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fionnbharthvirus | Fionnbharthvirus fionnbharth | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_43;immunity orf_45;cro orf_46 |