INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KM672662	Acinetobacter phage YMC13/03/R2096	98170	37.036	Acinetobacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii YMC13/03/R2096	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
KM677185	Lactococcus phage WRP3	130008	32.360	Lactococcus	Group I	Audreyjarvisvirus	Audreyjarvisvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Audreyjarvisvirus	Audreyjarvisvirus WRP3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2;integrase orf_162
KM677210	Mycobacterium phage Larenn	52967	63.540	Mycobacterium	Group I	Turbidovirus	Turbidovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Turbidovirus	Turbidovirus larenn	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_33;immunity orf_68
KM677211	Mycobacterium phage Murucutumbu	60609	66.693	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.040	AAI-based (high-confidence)	Anayavirus	Anayavirus murucutumbu	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_41;immunity orf_43
KM819694	Proteus phage PM 75	41480	41.560	Proteus	Group I	Novosibovirus	Novosibovirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Proteus mirabilis 821	High-quality	High-quality	98.720	AAI-based (high-confidence)	Novosibovirus	Novosibovirus PM75	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM819695	Proteus phage PM 85	43642	39.322	Proteus	Group I	Acadevirus	Acadevirus	Molineuxvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Proteus mirabilis strain 922 (LMMB NIBOCH collection)	High-quality	High-quality	97.870	AAI-based (high-confidence)	Acadevirus	Acadevirus PM85	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM819696	Proteus phage PM 93	45169	39.363	Proteus	Group I	Acadevirus	Acadevirus	Molineuxvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Proteus mirabilis strain 824 (LMMB NIBOCH collection)	High-quality	High-quality	100.000	AAI-based (high-confidence)	Acadevirus	Acadevirus PM93	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM873719	Flavobacterium phage FCL-2	47142	30.198	Flavobacterium	Group I	Ficleduovirus	Ficleduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Flavobacterium columnare B185	High-quality	High-quality	98.140	AAI-based (high-confidence)	Ficleduovirus	Ficleduovirus FCL2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM879221	Delftia phage RG-2014	73882	59.889	Delftia	Group I	Dendoorenvirus	Dendoorenvirus	Unclassified	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Delftia tsuruhatensis ARB-1	Complete	High-quality	100.000	DTR (high-confidence)	Dendoorenvirus	Dendoorenvirus RG2014	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM879463	Arthrobacter phage vB_ArtM-ArV1	71200	61.621	Arthrobacter	Group I	Klausavirus	Klausavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Klausavirus	Klausavirus ArV1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic