INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AP013540 | uncultured phage_MedDCM-OCT-S28-C10 | 40866 | 32.744 | Unspecified | Group I | Votkovvirus | Votkovvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Votkovvirus | Votkovvirus S28C10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_37 |
| AP013541 | uncultured phage_MedDCM-OCT-S42-C7 | 42399 | 33.921 | Unspecified | Group I | Sieqvirus | Sieqvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Sieqvirus | Sieqvirus S42C7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_53 |
| AP013542 | uncultured phage_MedDCM-OCT-S35-C6 | 42564 | 33.813 | Unspecified | Group I | Pelagivirus | Pelagivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Pelagivirus | Pelagivirus S35C6 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_48 |
| AP013543 | uncultured phage_MedDCM-OCT-S30-C28 | 37553 | 32.405 | Unspecified | Group I | Fussvirus | Fussvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Fussvirus | Fussvirus S30C28 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AP013544 | uncultured phage_MedDCM-OCT-S45-C18 | 40564 | 47.086 | Unspecified | Group I | Ayaqvirus | Ayaqvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Ayaqvirus | Ayaqvirus S45C18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_30 |
| AP013545 | uncultured phage MedDCM-OCT-S46-C10 | 41803 | 33.758 | Unspecified | Group I | Foussvirus | Foussvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Foussvirus | Foussvirus S46C10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_24 |
| AP013546 | uncultured phage_MedDCM-OCT-S37-C6 | 42127 | 54.680 | Unspecified | Group I | Oinezvirus | Oinezvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Oinezvirus | Oinezvirus S37C6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_27 |
| AP013547 | uncultured phage_MedDCM-OCT-S31-C1 | 43552 | 56.213 | Unspecified | Group I | Nohivirus | Nohivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Nohivirus | Nohivirus S31C1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_40 |
| AP013548 | uncultured phage_MedDCM-OCT-S38-C3 | 43698 | 57.064 | Unspecified | Group I | Stopalavirus | Stopalavirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Stopalavirus | Stopalavirus S38C3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_33 |
| AP013549 | uncultured phage_MedDCM-OCT-S39-C11 | 41987 | 51.556 | Unspecified | Group I | Krakvirus | Krakvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Krakvirus | Krakvirus S39C11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_11 |