INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OQ860981 | Salmonella phage ST17 | 38668 | 50.931 | Salmonella | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus ST17 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ860982 | Salmonella phage ST16 | 38234 | 50.949 | Salmonella | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | High-quality | High-quality | 96.120 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus ST16 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ860983 | Salmonella phage ST15 | 38351 | 50.924 | Salmonella | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus ST15 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ860984 | Salmonella phage ST11_da Silva-2023 | 38664 | 51.079 | Salmonella | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus ST10 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ860985 | Salmonella phage ST10 | 38059 | 51.081 | Salmonella | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus ST10 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ860986 | Salmonella phage ST3_da Silva-2023 | 38461 | 50.896 | Salmonella | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus ST21 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ860987 | Salmonella phage ST1_da Silva-2023 | 38461 | 50.888 | Salmonella | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus ST21 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ863044 | Brochothrix phage BtpYZU02 | 34258 | 36.727 | Brochothrix | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brochothrix thermosphacta | Medium-quality | Genome-fragment | 83.600 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_6 |
| OQ863045 | Brochothrix phage BtpYZU03 | 32751 | 37.645 | Brochothrix | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brochothrix thermosphacta | Medium-quality | Genome-fragment | 85.060 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_3 |
| OQ863049 | Staphylococcus phage SapYZUs8 | 46409 | 33.715 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.520 | AAI-based (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_28;cro orf_33;cro orf_34;antirepressor orf_36;integrase orf_70 |