INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OQ031491	Acinetobacter phage MRostami-2023a	44989	31.461	Acinetobacter	Group I	Vieuvirus	Vieuvirus	Unclassified	Buchnerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter sp.	High-quality	High-quality	93.760	AAI-based (high-confidence)	Vieuvirus	Vieuvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ031492	Escherichia phage MRostami-2023b	149246	37.575	Escherichia	Group I	Phapecoctavirus	Phapecoctavirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	High-quality	High-quality	98.470	AAI-based (high-confidence)	Phapecoctavirus	Phapecoctavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ031493	Pseudomonas phage MRostami-2023c	266737	36.495	Pseudomonas	Group I	Phikzvirus	Phikzvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	High-quality	High-quality	95.150	AAI-based (high-confidence)	Phikzvirus	Phikzvirus PA7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ031494	Staphylococcus phage MRostami-2023d	141029	30.311	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus sp.	High-quality	High-quality	99.600	AAI-based (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ031495	Escherichia phage MRostami-2023e	169098	36.861	Escherichia	Group I	Mosigvirus	Mosigvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	High-quality	High-quality	99.610	AAI-based (high-confidence)	Mosigvirus	Mosigvirus JS09	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ031496	Staphylococcus phage MRostami-2023f	138717	30.288	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus sp.	High-quality	High-quality	97.960	AAI-based (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ031658	Salmonella phage P22virB-3	41724	47.086	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lederbergvirus	Lederbergvirus P22	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_18;antirepressor orf_19;integrase orf_23;integrase orf_39;cro orf_45;antirepressor orf_62;integrase orf_65
OQ032511	Acinetobacter phage nACB1	79638	38.676	Acinetobacter	Group I	Nacbunavirus	Nacbunavirus	Brisouvirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter beijerinckii	Complete	High-quality	100.000	DTR (high-confidence)	Nacbunavirus	Nacbunavirus nacb1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ032512	Acinetobacter phage nACB2	136560	39.301	Acinetobacter	Group I	Ackermannviridae	Unclassified	Unclassified	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter halotolerans	High-quality	High-quality	95.360	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
OQ053201	Burkholderia phage CSP3	63038	66.544	Burkholderia	Group I	Lessievirus	Lessievirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia contaminans	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lessievirus	Lessievirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_52