INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OP580517	Microbacterium phage Hager	55828	63.783	Microbacterium	Group I	Krampusvirus	Krampusvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	99.000	AAI-based (high-confidence)	Krampusvirus	Krampusvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP580518	Microbacterium phage MelBee03	17441	68.436	Microbacterium	Group I	Paopuvirus	Paopuvirus	Pelczarvirinae	Orlajensenviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Paopuvirus	Paopuvirus quaker	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP583591	Xanthomonas phage F5	44616	61.296	Xanthomonas	Group I	Pradovirus	Pradovirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas perforans	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pradovirus	Pradovirus F5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP583592	Xanthomonas phage GF2	45223	61.080	Xanthomonas	Group I	Pradovirus	Pradovirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas perforans	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pradovirus	Pradovirus P4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP583593	Xanthomonas phage GF1	42522	60.994	Xanthomonas	Group I	Pradovirus	Pradovirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas perforans	High-quality	High-quality	95.550	AAI-based (high-confidence)	Pradovirus	Pradovirus P4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP583594	Xanthomonas phage P4	44329	60.915	Xanthomonas	Group I	Pradovirus	Pradovirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas perforans	High-quality	High-quality	99.610	AAI-based (high-confidence)	Pradovirus	Pradovirus P4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP583595	Xanthomonas phage S3	45224	61.076	Xanthomonas	Group I	Pradovirus	Pradovirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas perforans	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pradovirus	Pradovirus P4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP584903	Staphylococcus phage phiSa2wa-st1232	45907	33.126	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus subsp. aureus 20417 ST1232-MRSA-V	Complete	High-quality	100.000	DTR (high-confidence)	Triavirus	Triavirus P240	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;integrase orf_31
OP584904	Staphylococcus phage phiSa2wa-st2974	45452	33.235	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus subsp. aureus 20624 ST2974-MRSA-V	High-quality	High-quality	97.870	AAI-based (high-confidence)	Triavirus	Triavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_6;integrase orf_31
OP585103	Acinetobacter phage vB_AbaM_DP45	164031	36.770	Acinetobacter	Group I	Lazarusvirus	Lazarusvirus	Twarogvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii AB5	High-quality	High-quality	98.090	AAI-based (high-confidence)	Lazarusvirus	Lazarusvirus am101	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic