INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OP293079	Burkholderia phage PhiBt-E264.1	44526	61.566	Burkholderia	Group I	Stanholtvirus	Stanholtvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lysogenic Burkholderia thailandensis E264	Medium-quality	Genome-fragment	87.680	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_31
OP293233	Escherichia phage E20-1	77938	42.175	Escherichia	Group I	Kuravirus	Kuravirus	Gordonclarkvirinae	Mtkvariviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Suseptimavirus	Suseptimavirus EK010	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OP294982	Mycobacterium phage Kashi_BG2	42044	66.661	Mycobacterium	Group I	Liefievirus	Liefievirus	Gclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.750	AAI-based (high-confidence)	Liefievirus	Liefievirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32
OP296522	Variovorax phage VarioGold	39429	62.680	Variovorax	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Variovorax sp. ZS18.2.2	Medium-quality	Genome-fragment	70.900	HMM-based (lower-bound)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_28;cro orf_43
OP296941	Klebsiella phage DP	145648	44.553	Klebsiella	Group I	Mydovirus	Mydovirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae KP16	Complete	High-quality	100.000	DTR (high-confidence)	Mydovirus	Mydovirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OP297178	Staphylococcus phage vB_ScaM-V1SC04	138478	30.387	Staphylococcus	Group I	Twortvirinae	Unclassified	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus capitis	Complete	High-quality	100.000	DTR (high-confidence)	Kayvirus	Kayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_193
OP297179	Staphylococcus phage vB_ScaM-V1SC05	18001	30.121	Staphylococcus	Group I	Andhravirus	Andhravirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus capitis	High-quality	High-quality	99.300	AAI-based (high-confidence)	Andhravirus	Andhravirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP297528	Mycobacterium phage GigiOuiOui	56389	61.627	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.960	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_39;immunity orf_41;antirepressor orf_43
OP297529	Mycobacterium phage Happiness	51398	63.880	Mycobacterium	Group I	Backyardiganvirus	Backyardiganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Backyardiganvirus	Backyardiganvirus peaches	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_63
OP297530	Mycobacterium phage Nikao	59052	67.176	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.470	AAI-based (high-confidence)	Anayavirus	Anayavirus amelie	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_39;immunity orf_41