INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
ON778006	Pseudomonas phage vB_Pae_HB2107-3I	45929	56.907	Pseudomonas	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PA14	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
ON778007	Pseudomonas phage vB_Pae_LC3I3	49926	58.909	Pseudomonas	Group I	Hulijingvirus	Hulijingvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PA14	High-quality	High-quality	100.000	AAI-based (high-confidence)	Hulijingvirus	Hulijingvirus LC313	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_20
ON778463	Escherichia phage PO103-1	53040	43.933	Escherichia	Group I	Carltongylesvirus	Carltongylesvirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O103-1	High-quality	High-quality	99.820	AAI-based (high-confidence)	Carltongylesvirus	Carltongylesvirus PO1031	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON782130	Salmonella phage vB_Sal_PHB48	29575	52.423	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Enteritidis CICC 21482	High-quality	High-quality	93.150	AAI-based (high-confidence)	Eganvirus	Eganvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_14
ON782582	Escherichia phage ECP52	166195	35.425	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli	High-quality	High-quality	98.810	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus gee4507	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON807605	Phage vB_KsaM-C1	48879	48.176	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	antirepressor orf_42
ON809559	Klebsiella phage pKp11	43974	53.848	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Drulisvirus	Drulisvirus pKp11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
ON809560	Klebsiella phage pKp383	48837	48.535	Klebsiella	Group I	Sircambvirus	Sircambvirus	Jameshumphriesvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sircambvirus	Sircambvirus pKp383	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
ON809756	Salmonella phage Salfasec13b	40455	47.423	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028S	High-quality	High-quality	98.740	AAI-based (high-confidence)	Lederbergvirus	Lederbergvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_20;integrase orf_31;antirepressor orf_42
ON809761	Salmonella phage SeF1	42784	49.944	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028S	High-quality	High-quality	99.910	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic