INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ON014757 | Pseudanabaena phage Pam5 | 39509 | 62.846 | Pseudanabaena | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudanabaena sp. | High-quality | High-quality | 95.760 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_32 |
| ON015836 | Vibrio phage Vpas_PP24 | 83482 | 45.812 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON018986 | Escherichia phage JL22 | 99605 | 47.484 | Escherichia | Group I | Punavirus | Punavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 96.570 | AAI-based (high-confidence) | Punavirus | Punavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_52;antirepressor orf_107;cro orf_108;cro orf_109 |
| ON032529 | Salmonella phage SPF_0923 | 35456 | 49.238 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. S7 | Medium-quality | Genome-fragment | 77.020 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| ON036882 | Acinetobacter phage Brutus | 44931 | 37.426 | Acinetobacter | Group I | Brutusvirus | Brutusvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii strain MAR 15-3273 | High-quality | High-quality | 99.920 | AAI-based (high-confidence) | Brutusvirus | Brutusvirus Brutus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON036883 | Acinetobacter phage Scipio | 44602 | 37.640 | Acinetobacter | Group I | Scipiovirus | Scipiovirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii strain LUH 5534 | High-quality | High-quality | 99.230 | AAI-based (high-confidence) | Scipiovirus | Scipiovirus Scipio | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON041214 | Citrobacter phage Chris1 | 45393 | 49.911 | Citrobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter portucalensis Sb-2 | Complete | High-quality | 100.000 | Provirus (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_43 |
| ON042477 | Vibrio phage PhiImVa-1 | 77479 | 38.661 | Vibrio | Group I | Varunavirus | Varunavirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio alginolyticus strain NBRC 15630 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Varunavirus | Varunavirus philmva1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON042478 | Aeromonas phage AhFM11 | 168243 | 40.878 | Aeromonas | Group I | Biquartavirus | Biquartavirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | hypervirulent Aeromonas hydrophila Hyp AH Koi-20 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON042750 | Bacillus phage Chedec 11 | 17798 | 38.409 | Bacillus | Group I | Bahkauvirus | Bahkauvirus | Picovirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis | High-quality | High-quality | 91.670 | AAI-based (high-confidence) | Bahkauvirus | Bahkauvirus chedec | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |