INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OM892879 | Burkholderia phage PhiBP82.1 | 54921 | 60.678 | Burkholderia | Group I | Stanholtvirus | Stanholtvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei BP82 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Stanholtvirus | Stanholtvirus sv1026b | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OM897575 | Leptolyngbya phage Lbo240-yong1 | 39740 | 51.993 | Leptolyngbya | Group I | Wumpquatrovirus | Wumpquatrovirus | Unclassified | Saffermanviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leptolyngbya boryana FACHB-240 | High-quality | High-quality | 97.070 | AAI-based (high-confidence) | Wumpquatrovirus | Wumpquatrovirus Lbo240yong1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OM908436 | Escherichia phage TM1 | 39948 | 50.025 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. GXEC-TM1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus TM1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OM908766 | Salmonella phage S5 | 72519 | 39.446 | Salmonella | Group I | Ithacavirus | Ithacavirus | Humphriesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ithacavirus | Ithacavirus S5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OM912978 | Salmonella phage CF-SP2 | 159658 | 36.955 | Salmonella | Group I | Gelderlandvirus | Gelderlandvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serova Typhi | High-quality | High-quality | 94.930 | AAI-based (high-confidence) | Gelderlandvirus | Gelderlandvirus melville | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OM912979 | Salmonella phage CF-SP1 | 47771 | 45.032 | Salmonella | Group I | Swiduovirus | Swiduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Paratyphi A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| OM913583 | Mycobacterium phage Nutello | 56439 | 67.088 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 92.180 | AAI-based (high-confidence) | Anayavirus | Anayavirus amelie | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_35;immunity orf_37 |
| OM913584 | Mycobacterium phage Piatt | 59905 | 66.555 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.880 | AAI-based (high-confidence) | Anayavirus | Anayavirus adephagia | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42 |
| OM913585 | Mycobacterium Phage Rifter | 51687 | 61.369 | Mycobacterium | Group I | Gladiatorvirus | Gladiatorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.650 | AAI-based (high-confidence) | Gladiatorvirus | Gladiatorvirus hammer | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_32;immunity orf_70 |
| OM913586 | Arthrobacter phage Zeina | 55017 | 50.288 | Arthrobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis B-2979 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |