INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KC900379 | Mycobacterium phage PegLeg | 80955 | 61.549 | Mycobacterium | Group I | Bongovirus | Bongovirus | Mclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.050 | AAI-based (high-confidence) | Bongovirus | Bongovirus bongo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_106 |
| KC911856 | Salmonella phage SPC32H | 38689 | 50.156 | Salmonella | Group I | Uetakevirus | Uetakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Typhimurium strain LT2 | High-quality | High-quality | 96.910 | AAI-based (high-confidence) | Uetakevirus | Uetakevirus SPN1S | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_28 |
| KC911857 | Salmonella phage SPC32N | 38689 | 50.151 | Salmonella | Group I | Uetakevirus | Uetakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Typhimurium strain LT2 | High-quality | High-quality | 96.920 | AAI-based (high-confidence) | Uetakevirus | Uetakevirus SPN1S | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_20;integrase orf_28 |
| KC954774 | Cronobacter phage CR8 | 149162 | 50.832 | Cronobacter | Group I | Certrevirus | Certrevirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii ATCC 29544 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Certrevirus | Certrevirus CR8 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KC954775 | Cronobacter phage S13 | 182145 | 40.199 | Cronobacter | Group I | Straboviridae | Unclassified | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii ATCC 29544 | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | Nanhuvirus | Nanhuvirus LPCS28 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC959568 | Flavobacterium phage 6H | 46978 | 31.604 | Flavobacterium | Group I | Unahavirus | Unahavirus | Unclassified | Duneviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium psychrophilum strain MH1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Unahavirus | Unahavirus uv6H | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC960489 | Mycobacterium phage Adler | 95705 | 62.716 | Mycobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium abscessus subsp. bolletii strain F1660 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | parA orf_75 |
| KC960671 | Enterobacteria phage T3 | 38209 | 49.918 | Enterobacteria | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Teetrevirus | Teetrevirus T3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC969441 | Pseudomonas phage MBL | 42519 | 62.137 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Phikmvvirus | Phikmvvirus phiKMV | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF005317 | Alteromonas phage vB_AmaP_AD45-P1 | 103910 | 43.154 | Alteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Alteromonas macleodii str. 'Balearic Sea AD45' | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |