INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OL906435 | Planktothrix phage Pag-Yong1 | 65014 | 68.851 | Planktothrix | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 77.200 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OL944021 | Salmonella phage PhiSEP1 | 42730 | 50.108 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis HJL 348 | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL944022 | Salmonella phage PhiSTP1 | 44344 | 51.037 | Salmonella | Group I | Cornellvirus | Cornellvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium wild type HJL288 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cornellvirus | Cornellvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL944023 | Salmonella phage PhiSTP2 | 41788 | 51.426 | Salmonella | Group I | Guernseyvirinae | Unclassified | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium wild type HJL393 | High-quality | High-quality | 97.800 | AAI-based (high-confidence) | Cornellvirus | Cornellvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL944604 | Erwinia phage Gungnir39 | 48577 | 48.027 | Erwinia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia iniecta | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OL955261 | Erythrobacter phage vB_EliS-L02 | 150063 | 59.428 | Erythrobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erythrobacter sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OL956808 | Escherichia phage vB_EcoM-S1P5QW | 166102 | 35.451 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.790 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus gizh | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL959999 | Edwardsiella phage vB_EpP_ZHX | 41777 | 48.110 | Edwardsiella | Group I | Kafunavirus | Kafunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella piscicida | Complete | High-quality | 100.000 | DTR (high-confidence) | Kafunavirus | Kafunavirus KF1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL960029 | Pseudoxanthomonas phage PW916 | 47760 | 62.634 | Pseudoxanthomonas | Group I | Mesyanzhinovviridae | Unclassified | Unclassified | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoxanthomonas kaohsiungensis | Complete | High-quality | 100.000 | DTR (high-confidence) | Axeltriavirus | Axeltriavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_39 |
| OL960030 | Acinetobacter phage vB_AbaM_P1 | 107537 | 37.681 | Acinetobacter | Group I | Liaodongvirus | Liaodongvirus | Unclassified | Luriaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | Complete | High-quality | 100.000 | DTR (high-confidence) | Liaodongvirus | Liaodongvirus P1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |