INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OL581612 | Pseudomonas phage Eisa9 | 40730 | 59.236 | Pseudomonas | Group I | Pollyceevirus | Pollyceevirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. tomato str. DC3000 | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | Pollyceevirus | Pollyceevirus Eisa9 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OL604152 | Klebsiella phage vB_KpnS-Carvaje | 56858 | 45.675 | Klebsiella | Group I | Carvajevirus | Carvajevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | Carvajevirus | Carvajevirus carvaje | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OL606627 | Klebsiella phage vB_KaeS_Phraden | 59052 | 56.550 | Klebsiella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella aerogenes | High-quality | High-quality | 91.600 | AAI-based (high-confidence) | Chivirus | Chivirus SeWh1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_60 |
| OL614104 | Morganella phage Mecenats66 | 86193 | 49.065 | Morganella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Morganella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OL615010 | Shigella phage vB_SboD_StarDew | 44715 | 54.682 | Shigella | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella boydii | High-quality | High-quality | 99.980 | AAI-based (high-confidence) | Dhillonvirus | Dhillonvirus stardew | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL615011 | Shigella phage vB_SboS_Gloob | 158676 | 50.359 | Shigella | Group I | Agtrevirus | Agtrevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella boydii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Agtrevirus | Agtrevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OL615012 | Shigella phage vB_SboM_Phaginator | 166647 | 35.456 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella boydii | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OL615013 | Shigella phage ChubbyThor | 159319 | 50.096 | Shigella | Group I | Agtrevirus | Agtrevirus | Aglimvirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella boydii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Agtrevirus | Agtrevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OL617014 | Flyfo microvirus Tbat1_59 | 4315 | 36.848 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Pteropus tonganus | High-quality | High-quality | 98.180 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| OL617015 | Flyfo microvirus Tbat1_66 | 4179 | 55.157 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Pteropus tonganus | High-quality | High-quality | 90.240 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |