INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AJ854042 | Deltalipothrixvirus pozzuoliense | 31787 | 35.656 | Unspecified | Group I | Deltalipothrixvirus | Deltalipothrixvirus | Unclassified | Lipothrixviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Acidianus pozzuoliensis strain F28 | Medium-quality | Genome-fragment | 86.160 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AJ875026 | Acidianus rod-shaped virus 1 | 24655 | 39.128 | Acidianus | Group I | Itarudivirus | Itarudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Unspecified | Complete | High-quality | 100.000 | ITR (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AJ888457 | Bicaudavirus pozzuoliense | 62730 | 41.226 | Unspecified | Unclassified | Bicaudavirus | Bicaudavirus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_66 |
| AJ969242 | Spiroplasma phage SVGII3 | 7878 | 23.013 | Spiroplasma | Group II | Virgulavirus | Virgulavirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Circulifer haematoceps | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AJ972879 | Yersinia phage phiR1-37 | 262391 | 32.474 | Yersinia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AM076770 | Yersinia phage PY100 | 50291 | 46.841 | Yersinia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AM084414 | Escherichia phage K1F | 39699 | 49.777 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus K1F | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| AM084415 | Escherichia phage K1E | 45251 | 45.053 | Escherichia | Group I | Vectrevirus | Vectrevirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Vectrevirus | Vectrevirus K1E | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AM087120 | Betalipothrixvirus acidiani | 40449 | 36.854 | Unspecified | Group I | Betalipothrixvirus | Betalipothrixvirus | Unclassified | Lipothrixviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Unspecified | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AM087121 | Betalipothrixvirus pozzuoliense | 39577 | 36.870 | Unspecified | Group I | Betalipothrixvirus | Betalipothrixvirus | Unclassified | Lipothrixviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |