INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_072809 | Pseudomonas phage vB_PaeS_SCUT-S3 | 42622 | 53.489 | Pseudomonas | Group I | Septimatrevirus | Septimatrevirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa ATCC 9027 | High-quality | High-quality | 99.440 | AAI-based (high-confidence) | lytic | ||||
| NC_072810 | Pseudomonas phage UF_RH1 | 42567 | 53.591 | Pseudomonas | Group I | Septimatrevirus | Septimatrevirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 99.430 | AAI-based (high-confidence) | lytic | ||||
| NC_072811 | Escherichia phage Halfdan | 42858 | 53.666 | Escherichia | Group I | Halfdanvirus | Halfdanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli MG1655 K12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_073022 | Hafnia phage yong1 | 43329 | 47.649 | Hafnia | Group I | Hafyongvirus | Hafyongvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Hafnia paralvei | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_22 | |||
| NC_073023 | Sphingomonas phage Eidolon | 43318 | 54.996 | Sphingomonas | Group I | Eidolonvirus | Eidolonvirus | Johnpaulvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sphingomonas sp. PM2 | High-quality | High-quality | 99.380 | AAI-based (high-confidence) | lytic | ||||
| NC_073024 | Sphingomonas phage Kharn | 43408 | 55.879 | Sphingomonas | Group I | Kharnvirus | Kharnvirus | Johnpaulvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sphingomonas sp. PM2 | High-quality | High-quality | 99.390 | AAI-based (high-confidence) | lytic | ||||
| NC_073025 | Sphingomonas phage Lucius | 44200 | 55.966 | Sphingomonas | Group I | Kharnvirus | Kharnvirus | Johnpaulvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sphingomonas sp. PM2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_073026 | Xanthomonas phage vB_Xar_IVIA-DoCa5 | 56408 | 59.614 | Xanthomonas | Group I | Docaquintavirus | Docaquintavirus | Bradleyvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas arboricola pv. juglandis IVIA 1317-1a | High-quality | High-quality | 91.600 | AAI-based (high-confidence) | temperate | integrase orf_4 | |||
| NC_073027 | Stenotrophomonas phage A1432 | 61660 | 61.922 | Stenotrophomonas | Group I | Ghuizhouvirus | Ghuizhouvirus | Bradleyvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia YCR3A-1 | High-quality | High-quality | 99.750 | AAI-based (high-confidence) | lytic | ||||
| NC_073028 | Stenotrophomonas phage vB_Sm_QDWS359 | 61862 | 67.415 | Stenotrophomonas | Group I | Xooduovirus | Xooduovirus | Bradleyvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia SM102 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |