INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_054973 | Staphylococcus phage Baq_Sau1 | 44384 | 34.046 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus RN4220 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_29;antirepressor orf_36;integrase orf_63 | |||
| NC_054974 | Staphylococcus phage HSA84 | 42650 | 34.567 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 98.910 | AAI-based (high-confidence) | temperate | integrase orf_29;cro orf_31;cro orf_32;antirepressor orf_34;integrase orf_58 | |||
| NC_054975 | Staphylococcus phage SA75 | 43134 | 34.437 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_30;antirepressor orf_36;integrase orf_63 | |||
| NC_054976 | Staphylococcus phage SAP33 | 42414 | 33.963 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus KCTC 1621 | High-quality | High-quality | 98.410 | AAI-based (high-confidence) | temperate | integrase orf_10;antirepressor orf_15 | |||
| NC_054977 | Staphylococcus phage SP5 | 43305 | 34.446 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_3;antirepressor orf_6;integrase orf_34 | |||
| NC_054978 | Staphylococcus phage TEM126 | 41882 | 33.676 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 97.150 | AAI-based (high-confidence) | temperate | integrase orf_12;integrase orf_45;cro orf_49;cro orf_50;antirepressor orf_51;integrase orf_60 | |||
| NC_054979 | Staphylococcus phage B122 | 43108 | 34.987 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus CCM7722 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_8;integrase orf_38 | |||
| NC_054980 | Staphylococcus phage Henu2 | 43513 | 35.040 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus N315 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_15;cro orf_18;antirepressor orf_20;antirepressor orf_23;integrase orf_42 | |||
| NC_054981 | Staphylococcus phage vB_SauS-SAP27 | 43444 | 34.946 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_10;antirepressor orf_38;cro orf_41;cro orf_42;integrase orf_45 | |||
| NC_054982 | Staphylococcus phage Sebago | 43878 | 35.314 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;integrase orf_33;antirepressor orf_61;cro orf_62 |