INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_054455 | Mycobacterium phage Tapioca | 44205 | 66.137 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_36;immunity orf_37 | |||
| NC_054456 | Mycobacterium phage Jamie19 | 41278 | 66.244 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.580 | AAI-based (high-confidence) | temperate | integrase orf_33;immunity orf_34 | |||
| NC_054458 | Xanthomonas phage XPP1 | 46195 | 60.989 | Xanthomonas | Group I | Tsukubavirus | Tsukubavirus | Kantovirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas oryzae pv. oryzae | High-quality | High-quality | 96.780 | AAI-based (high-confidence) | lytic | ||||
| NC_054459 | Xanthomonas phage XPV1 | 46503 | 61.121 | Xanthomonas | Group I | Tsukubavirus | Tsukubavirus | Kantovirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas oryzae pv. oryzae | High-quality | High-quality | 97.470 | AAI-based (high-confidence) | lytic | ||||
| NC_054460 | Xanthomonas phage KPhi1 | 46077 | 62.817 | Xanthomonas | Group I | Beograduvirus | Beograduvirus | Kantovirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas euvesicatoria | High-quality | High-quality | 98.060 | AAI-based (high-confidence) | lytic | ||||
| NC_054461 | Xanthomonas virus phiXaf18 | 47407 | 62.970 | Xanthomonas | Group I | Beograduvirus | Beograduvirus | Kantovirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas vesicatoria | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_054462 | Ralstonia phage Adzire | 44732 | 62.228 | Ralstonia | Group I | Bakolyvirus | Bakolyvirus | Mascarenevirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum I-31 (MT043) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_054463 | Ralstonia phage Bakoly | 44222 | 62.324 | Ralstonia | Group I | Bakolyvirus | Bakolyvirus | Mascarenevirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum I-33 (MT009) | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_054464 | Edwardsiella phage Edno5 | 40844 | 50.803 | Edwardsiella | Group I | Gofduovirus | Gofduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella anguillarum EA011113 | High-quality | High-quality | 97.690 | AAI-based (high-confidence) | temperate | integrase orf_33;antirepressor orf_50 | |||
| NC_054465 | Aeromonas phage 2_D05 | 43233 | 56.360 | Aeromonas | Group I | Kunmingvirus | Kunmingvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas rivipollensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_53 |