INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_051738 | Mycobacterium phage ThulaThula | 50415 | 66.530 | Mycobacterium | Group I | Phayoncevirus | Phayoncevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_34;antirepressor orf_37 | |||
| NC_051739 | Mycobacterium phage Purky | 50513 | 66.385 | Mycobacterium | Group I | Purkyvirus | Purkyvirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_35 | |||
| NC_051740 | Mycobacterium phage Xavia | 49808 | 65.859 | Mycobacterium | Group I | Xaviavirus | Xaviavirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_34;immunity orf_39;antirepressor orf_42 | |||
| NC_052650 | Halobacterium phage phiH | 58072 | 63.678 | Halobacterium | Group I | Myohalovirus | Myohalovirus | Unclassified | Vertoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halobacterium salinarum R1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_052652 | Escherichia phage vB_EcoM_PHB05 | 147659 | 37.536 | Escherichia | Group I | Justusliebigvirus | Justusliebigvirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | shiga toxin-producing Escherichia coli | High-quality | High-quality | 97.690 | AAI-based (high-confidence) | lytic | ||||
| NC_052653 | Escherichia phage vB_vPM_PD06 | 149506 | 37.652 | Escherichia | Group I | Justusliebigvirus | Justusliebigvirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | lytic | ||||
| NC_052654 | Escherichia phage vB_EcoM-Ro121c4YLVW | 151671 | 39.099 | Escherichia | Group I | Phapecoctavirus | Phapecoctavirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli STEC O121 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_052655 | Escherichia phage alia | 147009 | 37.511 | Escherichia | Group I | Justusliebigvirus | Justusliebigvirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 subsr. MG1655 | High-quality | High-quality | 97.260 | AAI-based (high-confidence) | lytic | ||||
| NC_052656 | Escherichia phage anhysbys | 149335 | 39.116 | Escherichia | Group I | Phapecoctavirus | Phapecoctavirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 subsr. MG1655 | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | lytic | ||||
| NC_052657 | Escherichia phage muut | 146307 | 37.365 | Escherichia | Group I | Justusliebigvirus | Justusliebigvirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 subsr. MG1655 | High-quality | High-quality | 96.800 | AAI-based (high-confidence) | lytic |