INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AJ312240 | Listeria phage PSA | 37618 | 34.725 | Listeria | Group I | Psavirus | Psavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes ScottA | High-quality | High-quality | 99.210 | AAI-based (high-confidence) | Psavirus | Psavirus PSA | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26;cro orf_29 |
| AJ318471 | Enterobacteria phage T3 | 38208 | 49.901 | Enterobacteria | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Teetrevirus | Teetrevirus T3Luria | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AJ344259 | Sulfolobus islandicus rod-shaped virus 2 | 35450 | 25.199 | Sulfolobus | Group I | Icerudivirus | Icerudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Sulfolobus islandicus | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AJ414696 | Sulfolobus islandicus rod-shaped virus 1 | 32308 | 25.269 | Sulfolobus | Group I | Icerudivirus | Icerudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Sulfolobus islandicus KVEM10H3 | High-quality | High-quality | 94.870 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AJ421943 | Oenococcus phage fOg44 | 10858 | 35.458 | Oenococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Oenococcus oeni | Low-quality | Genome-fragment | 27.240 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_12 |
| AJ505558 | Pseudomonas phage phiKMV | 42519 | 62.297 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Phikmvvirus | Phikmvvirus phiKMV | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AJ536073 | Bacillus phage pGIL01 | 14931 | 39.729 | Bacillus | Group I | Betatectivirus | Betatectivirus | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Bacillus thuringiensis serovar israelensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Betatectivirus | Betatectivirus Bam35 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| AJ550635 | Chlamydia phage 3 | 4554 | 41.041 | Chlamydia | Group II | Chlamydiaduovirus | Chlamydiaduovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | C. pecorum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AJ550940 | Lomovskayavirus BT1 | 41831 | 62.762 | Unspecified | Group I | Lomovskayavirus | Lomovskayavirus | Unclassified | Colingsworthviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lomovskayavirus | Lomovskayavirus BT1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_50 |
| AJ556162 | Enterobacteria phage BP-4795 | 57930 | 50.608 | Enterobacteria | Group I | Marienburgvirus | Marienburgvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli, strain 4795/97, serotype O84:H4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Marienburgvirus | Marienburgvirus BP4795 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_21;cro orf_22;antirepressor orf_47 |