INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_049938 | Enterococcus phage vB_EfaP_Efmus1 | 17927 | 33.542 | Enterococcus | Group I | Copernicusvirus | Copernicusvirus | Sarlesvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis strain Sorialis | High-quality | High-quality | 97.650 | AAI-based (high-confidence) | lytic | ||||
| NC_049939 | Enterococcus phage vB_EfaP_Ef7.3 | 18818 | 32.952 | Enterococcus | Group I | Copernicusvirus | Copernicusvirus | Sarlesvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis strain AH7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_049940 | Enterococcus phage vB_EfaP_Ef7.4 | 18415 | 33.098 | Enterococcus | Group I | Copernicusvirus | Copernicusvirus | Sarlesvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis strain AH7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_049941 | Stx2-converting phage Stx2a_WGPS2 | 58326 | 51.380 | Unspecified | Group I | Sawaravirus | Sawaravirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 980938 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_8;antirepressor orf_11;antirepressor orf_35 | |||
| NC_049942 | Escherichia phage JLK-2012 | 57198 | 50.719 | Escherichia | Group I | Marienburgvirus | Marienburgvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O55:H7 str. DEC5E | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_27;cro orf_28;antirepressor orf_41 | |||
| NC_049943 | Enterobacteria phage 2851 | 57248 | 51.053 | Enterobacteria | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | E. coli O157:H7 strain CB2851 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_23;cro orf_24;antirepressor orf_37;antirepressor orf_73 | |||
| NC_049944 | Stx2-converting phage Stx2a_WGPS8 | 55023 | 51.030 | Unspecified | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 982243 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_23;cro orf_24;antirepressor orf_34;antirepressor orf_72 | |||
| NC_049945 | Stx2-converting phage Stx2a_WGPS6 | 57849 | 50.678 | Unspecified | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 990570 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_5;antirepressor orf_6;cro orf_24;cro orf_25;antirepressor orf_35;antirepressor orf_36;antirepressor orf_71 | |||
| NC_049946 | Escherichia phage 4A7 | 49168 | 49.770 | Escherichia | Group I | Bievrevirus | Bievrevirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_32;cro orf_45 | |||
| NC_049947 | Escherichia phage 1H12 | 46703 | 50.027 | Escherichia | Group I | Jouyvirus | Jouyvirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | temperate | integrase orf_32;cro orf_48;cro orf_49 |