INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_048636 | Staphylococcus phage P1105 | 42282 | 33.463 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | temperate | integrase orf_27;cro orf_33;cro orf_34;antirepressor orf_35;integrase orf_66 | |||
| NC_048637 | Nodularia phage vB_NpeS-2AV2 | 139100 | 40.278 | Nodularia | Group I | Ravarandavirus | Ravarandavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Nodularia sp. AV2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_66;cro orf_75 | |||
| NC_048638 | Pseudomonas phage ZC03 | 69844 | 42.601 | Pseudomonas | Group I | Zicotriavirus | Zicotriavirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 98.690 | AAI-based (high-confidence) | lytic | ||||
| NC_048639 | Pseudomonas phage ZC08 | 70774 | 43.074 | Pseudomonas | Group I | Zicotriavirus | Zicotriavirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_048640 | Bacillus phage vB_BtS_BMBtp14 | 50740 | 36.762 | Bacillus | Group I | Bembunaquatrovirus | Bembunaquatrovirus | Skryabinvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis BGSC 4AJ1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_10;integrase orf_51 | |||
| NC_048641 | Bacillus phage PfEFR-4 | 43223 | 35.437 | Bacillus | Group I | Hubeivirus | Hubeivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus EFR-4 | High-quality | High-quality | 98.740 | AAI-based (high-confidence) | temperate | integrase orf_24;antirepressor orf_35;integrase orf_62 | |||
| NC_048642 | Clostridium phage CDKM9 | 49822 | 28.975 | Clostridium | Group I | Colneyvirus | Colneyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile strain CD105HE1 ribotype 076 | High-quality | High-quality | 99.920 | AAI-based (high-confidence) | temperate | integrase orf_41;antirepressor orf_47 | |||
| NC_048643 | Clostridium phage CDKM15 | 50605 | 28.683 | Clostridium | Group I | Colneyvirus | Colneyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile strain CD105HE1 ribotype 076 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_46;antirepressor orf_52 | |||
| NC_048644 | Staphylococcus phage 3 AJ-2017 | 43922 | 33.277 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 5sau489 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_31;antirepressor orf_54;cro orf_58;integrase orf_62 | |||
| NC_048645 | Cronobacter phage vB_CsaM_leB | 177907 | 44.871 | Cronobacter | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii ATCC BAA894 | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | lytic |