INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_047748 | Klebsiella phage phiBO1E | 43865 | 53.852 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae subsp. pneumoniae KKBO-1 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_047749 | Escherichia phage DT571/2 | 108418 | 39.678 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_047750 | Mannheimia phage vB_MhM_1127AP1 | 36745 | 41.984 | Mannheimia | Group I | Baylorvirus | Baylorvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mannheimia haemolytica 1127A serotype A2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_35;cro orf_36;integrase orf_53 | |||
| NC_047751 | Ralstonia phage phiITL-1 | 38731 | 62.751 | Ralstonia | Group I | Serkorvirus | Serkorvirus | Unclassified | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum Coatlan | High-quality | High-quality | 97.080 | AAI-based (high-confidence) | lytic | ||||
| NC_047752 | Burkholderia phage AP3 | 36499 | 64.407 | Burkholderia | Group I | Aptresvirus | Aptresvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia 7780 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_46 | |||
| NC_047753 | Salmonella phage SEN8 | 35203 | 51.936 | Salmonella | Group I | Felsduovirus | Felsduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. salamae 244/03 II | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | temperate | integrase orf_32;cro orf_33 | |||
| NC_047754 | Escherichia phage phiAPCEc03 | 103737 | 38.933 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 91.820 | AAI-based (high-confidence) | lytic | ||||
| NC_047755 | Yersinia phage phiYe-F10 | 39210 | 50.699 | Yersinia | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_047756 | Caulobacter phage Sansa | 80297 | 65.751 | Caulobacter | Group I | Sansavirus | Sansavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_047757 | Caulobacter phage Seuss | 85138 | 61.403 | Caulobacter | Group I | Seussvirus | Seussvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |