INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_042054 | Pseudomonas phage vB_PsyM_KIL4 | 92816 | 44.897 | Pseudomonas | Group I | Flaumdravirus | Flaumdravirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. porri LMG 28495 | High-quality | High-quality | 96.150 | AAI-based (high-confidence) | lytic | ||||
| NC_042055 | Mycobacterium phage Pipsqueaks | 43679 | 66.277 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_36;immunity orf_37 | |||
| NC_042056 | Erwinia phage Machina | 241654 | 51.013 | Erwinia | Group I | Machinavirus | Machinavirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora ATCC 29780 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | lytic | ||||
| NC_042057 | Escherichia phage DE3 | 42925 | 51.884 | Escherichia | Group I | Lambdavirus | Lambdavirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21(DE3) | Medium-quality | Genome-fragment | 87.750 | AAI-based (high-confidence) | temperate | cro orf_18;antirepressor orf_19 | |||
| NC_042058 | Mycobacterium phage Wonder | 48491 | 63.950 | Mycobacterium | Group I | Microwolfvirus | Microwolfvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.150 | AAI-based (high-confidence) | temperate | integrase orf_32;immunity orf_72 | |||
| NC_042060 | Pseudomonas phage PA7 | 266743 | 36.933 | Pseudomonas | Group I | Phikzvirus | Phikzvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 95.150 | AAI-based (high-confidence) | lytic | ||||
| NC_042061 | Salmonella phage STML-13-1 | 157235 | 44.782 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | lytic | ||||
| NC_042062 | Salmonella phage SP069 | 41391 | 42.475 | Salmonella | Group I | Nonanavirus | Nonanavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | Medium-quality | Genome-fragment | 72.970 | AAI-based (high-confidence) | lytic | ||||
| NC_042063 | Salmonella phage SP069 | 13598 | 43.506 | Salmonella | Group I | Nonanavirus | Nonanavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | Low-quality | Genome-fragment | 23.850 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| NC_042065 | Salmonella phage FSL SP-101 | 41873 | 50.269 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |