INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_042034 | Mycobacterium phage ChrisnMich | 70428 | 69.075 | Mycobacterium | Group I | Coopervirus | Coopervirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | lytic | ||||
| NC_042035 | Mycobacterium phage Zemanar | 71092 | 68.876 | Mycobacterium | Group I | Coopervirus | Coopervirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_042036 | Mycobacterium phage Rockstar | 47780 | 64.280 | Mycobacterium | Group I | Veracruzvirus | Veracruzvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.000 | AAI-based (high-confidence) | temperate | integrase orf_30;immunity orf_64 | |||
| NC_042037 | Aeromonas phage pIS4-A | 47624 | 47.279 | Aeromonas | Group I | Roufvirus | Roufvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas sp. IS4 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_042038 | Escherichia phage phiKP26 | 47285 | 44.257 | Escherichia | Group I | Rogunavirus | Rogunavirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Oranienburg 190 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_042039 | Shigella phage Sf22 | 166283 | 35.509 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri, Shigella boydii, Shigella dysenteriae, Shigella sonnei | High-quality | High-quality | 98.900 | AAI-based (high-confidence) | lytic | ||||
| NC_042040 | Rhodococcus phage Trina | 139262 | 44.724 | Rhodococcus | Group I | Trinavirus | Trinavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_042041 | Klebsiella phage vB_KpnM_KpV79 | 47760 | 48.955 | Klebsiella | Group I | Sircambvirus | Sircambvirus | Jameshumphriesvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.350 | AAI-based (high-confidence) | lytic | ||||
| NC_042042 | Streptomyces phage Scap1 | 43060 | 60.876 | Streptomyces | Group I | Scapunavirus | Scapunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces scabiei RL-34 | High-quality | High-quality | 95.950 | AAI-based (high-confidence) | lytic | ||||
| NC_042043 | Escherichia phage SRT8 | 49579 | 48.034 | Escherichia | Group I | Sertoctavirus | Sertoctavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21 | High-quality | High-quality | 99.400 | AAI-based (high-confidence) | lytic |