INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_041902 | Pseudomonas phage PA5 | 66182 | 55.489 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_041903 | Pseudomonas phage PA10 | 91212 | 49.305 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 98.070 | AAI-based (high-confidence) | lytic | ||||
| NC_041904 | Pseudomonas phage Zigelbrucke | 92338 | 49.318 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 99.290 | AAI-based (high-confidence) | temperate | cro orf_86 | |||
| NC_041905 | Acinetobacter phage SH-Ab 15519 | 40493 | 39.464 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 97.760 | AAI-based (high-confidence) | lytic | ||||
| NC_041906 | Escherichia phage EC1-UPM | 70912 | 42.887 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O78:K80 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_041907 | Pseudomonas phage PA26 | 72321 | 54.818 | Pseudomonas | Group I | Litunavirus | Litunavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 99.300 | AAI-based (high-confidence) | lytic | ||||
| NC_041908 | Rhizobium phage RHEph04 | 53018 | 56.422 | Rhizobium | Group I | Kleczkowskavirus | Kleczkowskavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli GR56 | High-quality | High-quality | 97.910 | AAI-based (high-confidence) | lytic | ||||
| NC_041909 | Paenibacillus phage Shelly | 41152 | 41.534 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae ATCC 9545 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_32;antirepressor orf_36;antirepressor orf_40;integrase orf_59 | |||
| NC_041910 | Vibrio phage SSP002 | 76350 | 48.777 | Vibrio | Group I | Mardecavirus | Mardecavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio vulnificus | High-quality | High-quality | 99.640 | AAI-based (high-confidence) | lytic | ||||
| NC_041911 | Ralstonia phage RP12 | 279845 | 53.404 | Ralstonia | Group I | Ripduovirus | Ripduovirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_54 |