INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_031074 | Gordonia phage Bantam | 92580 | 64.705 | Gordonia | Group I | Bantamvirus | Bantamvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.960 | AAI-based (high-confidence) | temperate | integrase orf_58;immunity orf_60 | |||
| NC_031075 | Lactococcus phage M5938 | 22240 | 35.863 | Lactococcus | Group I | Ceduovirus | Ceduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis DGCC7271 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031076 | Propionibacterium phage PFR1 | 38071 | 64.842 | Propionibacterium | Group I | Pulverervirus | Pulverervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii | High-quality | High-quality | 96.040 | AAI-based (high-confidence) | temperate | integrase orf_26 | |||
| NC_031077 | Enterobacter phage Tyrion | 41760 | 50.587 | Enterobacter | Group I | Uetakevirus | Uetakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter sp. CT7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_24;integrase orf_31 | |||
| NC_031078 | Streptomyces phage Nanodon | 50082 | 65.698 | Streptomyces | Group I | Likavirus | Likavirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus ATCC 10137 | High-quality | High-quality | 98.420 | AAI-based (high-confidence) | temperate | immunity orf_29;integrase orf_48 | |||
| NC_031080 | Mycobacterium phage Tonenili | 160985 | 64.090 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031081 | Escherichia phage Envy | 45206 | 54.457 | Escherichia | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031082 | Escherichia phage vB_EcoM_Alf5 | 87662 | 39.018 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K12 | High-quality | High-quality | 99.570 | AAI-based (high-confidence) | lytic | ||||
| NC_031084 | Propionibacterium phage BruceLethal | 29249 | 54.039 | Propionibacterium | Group I | Pahexavirus | Pahexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium acnes ATCC 6919 | High-quality | High-quality | 99.290 | AAI-based (high-confidence) | lytic | ||||
| NC_031085 | Shigella virus SHBML501 | 166634 | 35.372 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sonnei | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | lytic |