INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_029104 | Brevibacillus phage Jimmer1 | 54312 | 38.109 | Brevibacillus | Group I | Jimmervirus | Jimmervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brevibacillus laterosporus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_19;antirepressor orf_74 | |||
| NC_029106 | Achromobacter phage phiAxp-2 | 62220 | 60.111 | Achromobacter | Group I | Fengtaivirus | Fengtaivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_029107 | Ralstonia phage RS138 | 41941 | 65.103 | Ralstonia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_029116 | Clostridium phage phiCDHM13 | 33596 | 29.989 | Clostridium | Group I | Sherbrookevirus | Sherbrookevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 98.350 | AAI-based (high-confidence) | temperate | parA orf_34;cro orf_38;integrase orf_49 | |||
| NC_029118 | Lactococcus phage GE1 | 24847 | 37.872 | Lactococcus | Group I | Chertseyvirus | Chertseyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus garvieae INS1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_029119 | Staphylococcus phage SPbeta-like | 127726 | 30.534 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis 36-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_13;integrase orf_29;integrase orf_50;integrase orf_61;integrase orf_146;integrase orf_156 | |||
| NC_029120 | Shigella phage 75/02 Stx | 60875 | 49.117 | Shigella | Group I | Diegovirus | Diegovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sonnei 75/02 | High-quality | High-quality | 92.750 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_26;antirepressor orf_42;antirepressor orf_75;antirepressor orf_76 | |||
| NC_029121 | Bacillus phage Bp8p-C | 151417 | 41.153 | Bacillus | Group I | Agatevirus | Agatevirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pumilus GR8 | High-quality | High-quality | 98.420 | AAI-based (high-confidence) | lytic | ||||
| NC_029314 | Acidianus rod-shaped virus 2 | 29763 | 32.349 | Acidianus | Group I | Hoswirudivirus | Hoswirudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Sulfolobales | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_029316 | Acidianus tailed spindle virus | 70812 | 36.410 | Acidianus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Acidianus sp. CHAS | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_88 |