INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_029012 | Parabacteroides phage YZ-2015a | 4623 | 42.808 | Parabacteroides | Group II | Pacdirvirus | Pacdirvirus | Unclassified | Pichoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Parabacteroides distasonis | High-quality | High-quality | 97.640 | AAI-based (high-confidence) | unknown | ||||
| NC_029013 | Citrobacter phage IME-CF2 | 177688 | 43.181 | Citrobacter | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 99.770 | AAI-based (high-confidence) | lytic | ||||
| NC_029014 | Parabacteroides phage YZ-2015b | 5001 | 40.152 | Parabacteroides | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Parabacteroides merdae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_029015 | Salmonella phage SEN4 | 33509 | 53.365 | Salmonella | Group I | Senquatrovirus | Senquatrovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. salamae 200/01 II | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_28;integrase orf_39 | |||
| NC_029016 | Enterococcus phage vB_EfaS_IME198 | 58000 | 40.019 | Enterococcus | Group I | Saphexavirus | Saphexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis 2008 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_029017 | Pseudomonas phage KPP21 | 73420 | 53.499 | Pseudomonas | Group I | Luzseptimavirus | Luzseptimavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseduomonas aeruginosa | High-quality | High-quality | 99.080 | AAI-based (high-confidence) | lytic | ||||
| NC_029018 | Mycobacterium phage Anubis | 50854 | 64.003 | Mycobacterium | Group I | Microwolfvirus | Microwolfvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_32;immunity orf_69 | |||
| NC_029019 | Stenotrophomonas phage vB_SmaS-DLP_2 | 42593 | 53.715 | Stenotrophomonas | Group I | Septimatrevirus | Septimatrevirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia D1585 | High-quality | High-quality | 99.470 | AAI-based (high-confidence) | lytic | ||||
| NC_029020 | Sulfolobus monocaudavirus SMV2 | 50918 | 43.552 | Sulfolobus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_34 | |||
| NC_029021 | Enterobacteria phage JenK1 | 60747 | 43.862 | Enterobacteria | Group I | Nonagvirus | Nonagvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 subsr. MG1655 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |