INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028693 | Enterococcus phage vB_EfaP_IME195 | 18655 | 33.203 | Enterococcus | Group I | Copernicusvirus | Copernicusvirus | Sarlesvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis 2003 | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_028694 | Propionibacterium phage PA1-14 | 29407 | 53.851 | Propionibacterium | Group I | Pahexavirus | Pahexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium acnes A1-14 | High-quality | High-quality | 99.820 | AAI-based (high-confidence) | lytic | ||||
| NC_028695 | Enterobacter phage phiEap-2 | 40491 | 51.972 | Enterobacter | Group I | Guernseyvirinae | Unclassified | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter aerogenes 3-SP | High-quality | High-quality | 96.180 | AAI-based (high-confidence) | lytic | ||||
| NC_028696 | Salmonella phage SEN22 | 41338 | 47.828 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. diarizonae 89/00 IIIb | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_25;cro orf_40;antirepressor orf_41 | |||
| NC_028697 | Streptococcus phage A25 | 33900 | 38.448 | Streptococcus | Group I | Stonewallvirus | Stonewallvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pyogenes K56; Streptococcus pyogenes ATCC 12204 | Medium-quality | Genome-fragment | 88.190 | AAI-based (high-confidence) | temperate | antirepressor orf_1 | |||
| NC_028698 | Salmonella phage f18SE | 41868 | 49.799 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enteritidis | High-quality | High-quality | 97.540 | AAI-based (high-confidence) | lytic | ||||
| NC_028699 | Salmonella phage SEN34 | 40740 | 49.912 | Salmonella | Group I | Brunovirus | Brunovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. diarizonae 519/03 IIIb | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_30;cro orf_42 | |||
| NC_028700 | Streptococcus phage T12 | 37976 | 38.106 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pyogenes | High-quality | High-quality | 98.300 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_028701 | Salmonella phage SEN5 | 33509 | 53.365 | Salmonella | Group I | Senquatrovirus | Senquatrovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. salamae 241/01 II | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_28;integrase orf_39 | |||
| NC_028702 | Delftia phage IME-DE1 | 38084 | 60.427 | Delftia | Group I | Piedvirus | Piedvirus | Unclassified | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Delftia sp. 670 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |