INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_022747 | Vibrio phage VPUSM 8 | 34145 | 48.783 | Vibrio | Group I | Longwoodvirus | Longwoodvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae O1 El Tor Inaba | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2 | |||
| NC_022749 | Shigella phage SfIV | 39758 | 50.297 | Shigella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri serotype 4av | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_31;cro orf_39 | |||
| NC_022750 | Enterobacteria phage fiAA91-ss | 33628 | 51.906 | Enterobacteria | Group I | Peduovirus | Peduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_29;immunity orf_30 | |||
| NC_022751 | Cyanophage PP | 42480 | 46.408 | Unspecified | Unclassified | Podoviridae | Unclassified | Unclassified | Podoviridae | Caudovirales | Unclassified | Unclassified | Unclassified | Unclassified | Phormidium foveolarum | High-quality | High-quality | 98.220 | AAI-based (high-confidence) | lytic | ||||
| NC_022752 | Salmonella phage SETP13 | 42665 | 49.788 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enteritidis | High-quality | High-quality | 99.440 | AAI-based (high-confidence) | lytic | ||||
| NC_022753 | Mycobacterium phage Fredward | 52282 | 61.241 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.810 | AAI-based (high-confidence) | temperate | integrase orf_28;immunity orf_79 | |||
| NC_022754 | Salmonella phage SETP7 | 42749 | 49.901 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enteritidis | High-quality | High-quality | 99.670 | AAI-based (high-confidence) | lytic | ||||
| NC_022756 | Lactobacillus phage J-1 | 40931 | 44.768 | Lactobacillus | Group I | Junavirus | Junavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei 27092 | High-quality | High-quality | 97.810 | AAI-based (high-confidence) | temperate | integrase orf_22;cro orf_49 | |||
| NC_022757 | Lactobacillus phage PL-1 | 38880 | 44.882 | Lactobacillus | Group I | Junavirus | Junavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei 27139 | High-quality | High-quality | 92.650 | AAI-based (high-confidence) | temperate | integrase orf_23;cro orf_47 | |||
| NC_022758 | Staphylococcus phage YMC/09/04/R1988 | 44459 | 33.370 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | methicillin-resistant Staphylococcus aureus YMC/09/04/R1988 | High-quality | High-quality | 95.710 | AAI-based (high-confidence) | temperate | integrase orf_26;cro orf_31;integrase orf_55 |