INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_022069 | Mycobacterium phage Jabbawokkie | 55213 | 61.073 | Mycobacterium | Group I | Avanivirus | Avanivirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.450 | AAI-based (high-confidence) | temperate | integrase orf_51;immunity orf_52;cro orf_53 | |||
| NC_022070 | Mycobacterium phage Wheeler | 53588 | 63.316 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_36;immunity orf_68 | |||
| NC_022071 | Mycobacterium phage Crossroads | 76129 | 58.945 | Mycobacterium | Group I | Faithunavirus | Faithunavirus | Lclasvirinae | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_39;immunity orf_41;cro orf_42 | |||
| NC_022085 | Mycobacterium phage Goku | 76483 | 62.830 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_48;immunity orf_51 | |||
| NC_022086 | Mycobacterium phage LittleCherry | 50690 | 60.933 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_27;immunity orf_60 | |||
| NC_022087 | Mycobacterium phage AnnaL29 | 53253 | 64.389 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | parA orf_35;immunity orf_72 | |||
| NC_022088 | Bacillus phage Troll | 163019 | 37.825 | Bacillus | Group I | Bequatrovirus | Bequatrovirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacilluls thuringiensis kurstaki | High-quality | High-quality | 99.380 | AAI-based (high-confidence) | lytic | ||||
| NC_022090 | Staphylococcus phage vB_SauM_Remus | 134643 | 29.973 | Staphylococcus | Group I | Silviavirus | Silviavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus (phage propagation strain 47) | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | temperate | antirepressor orf_177 | |||
| NC_022091 | Pseudomonas phage MPK7 | 42874 | 62.138 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | lytic | ||||
| NC_022094 | Bacillus phage Wip1 | 14319 | 36.846 | Bacillus | Group I | Betatectivirus | Betatectivirus | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Bacillus anthracis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |