INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_021557 | Rhizobium phage RR1-B | 37378 | 58.272 | Rhizobium | Group I | Ribunavirus | Ribunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium radiobacter P007 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021558 | Paenibacillus phage PG1 | 37644 | 42.400 | Paenibacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus glucanolyticus P073A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_27 | |||
| NC_021559 | Prochlorococcus phage P-SSM3 | 179063 | 36.731 | Prochlorococcus | Group I | Ronodorvirus | Ronodorvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus marinus NATL2A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_186 | |||
| NC_021560 | Rhizobium phage RR1-A | 53102 | 57.164 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium radiobacter P007 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | antirepressor orf_67 | |||
| NC_021561 | Vibrio phage pYD38-B | 37324 | 43.077 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio sp. YD38 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021562 | Vibrio phage VFJ | 8555 | 44.290 | Vibrio | Group II | Saetivirus | Saetivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae O139 serogroup strain ICDC-4470 | High-quality | High-quality | 98.890 | AAI-based (high-confidence) | lytic | ||||
| NC_021563 | Serratia phage Eta | 42724 | 49.913 | Serratia | Group I | Seretavirus | Seretavirus | Unclassified | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021569 | Stenotrophomonas phage SMA7 | 7069 | 62.343 | Stenotrophomonas | Group II | Subteminivirus | Subteminivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Stenotrophomonas maltophilia Khak84 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021772 | Salmonella phage FSL SP-058 | 72394 | 39.586 | Salmonella | Group I | Ithacavirus | Ithacavirus | Humphriesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_021773 | Staphylococcus phage JS01 | 43458 | 33.320 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus JS201101 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_10;cro orf_15;cro orf_16;antirepressor orf_17;integrase orf_41 |