INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_021321 | Halorubrum tailed phage 8 | 74519 | 57.097 | Halorubrum | Group I | Haloferacalesvirus | Haloferacalesvirus | Unclassified | Hafunaviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum sp. B2-2 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_40 | |||
| NC_021322 | Haloarcula hispanica tailed virus 1 | 49107 | 56.460 | Haloarcula | Group I | Clampvirus | Clampvirus | Unclassified | Madisaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Haloarcula hispanica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021323 | Staphylococcus phage StauST398-2 | 45572 | 33.341 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 98.180 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_6;integrase orf_28 | |||
| NC_021324 | Mycobacterium phage CASbig | 53369 | 63.612 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | immunity orf_19;integrase orf_55 | |||
| NC_021325 | Clostridium phage vB_CpeS-CP51 | 39108 | 28.076 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens 5147-97 | High-quality | High-quality | 98.720 | AAI-based (high-confidence) | lytic | ||||
| NC_021326 | Staphylococcus phage StauST398-1 | 45242 | 34.464 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 100 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_2;integrase orf_33;antirepressor orf_58;antirepressor orf_62;cro orf_66 | |||
| NC_021327 | Halovirus HCTV-5 | 102105 | 57.594 | Unspecified | Group I | Tredecimvirus | Tredecimvirus | Unclassified | Druskaviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Haloarcula californiae | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_021328 | Halogranum tailed virus 1 | 143855 | 50.363 | Halogranum | Group I | Hagravirus | Hagravirus | Unclassified | Halomagnusviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halogranum sp. SS5-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021329 | Halorubrum tailed virus 4 | 35722 | 59.482 | Halorubrum | Group I | Saldibavirus | Saldibavirus | Unclassified | Haloferuviridae | Kirjokansivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum sp. s5a-3 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021330 | Haloarcula californiae tailed virus 1 | 103257 | 56.958 | Haloarcula | Group I | Hacavirus | Hacavirus | Unclassified | Druskaviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Haloarcula californiae | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |