INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_020998 | Haloarcula hispanica virus PH1 | 28072 | 67.640 | Haloarcula | Group I | Alphasphaerolipovirus | Alphasphaerolipovirus | Unclassified | Sphaerolipoviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Haloarcula hispanica ATCC 33960 | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_021061 | Mycobacterium phage Butters | 41491 | 65.838 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.180 | AAI-based (high-confidence) | temperate | integrase orf_36;immunity orf_37 | |||
| NC_021062 | Pseudomonas phage Phi-S1 | 40192 | 56.213 | Pseudomonas | Group I | Pifdecavirus | Pifdecavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens | High-quality | High-quality | 99.610 | AAI-based (high-confidence) | lytic | ||||
| NC_021063 | Mycobacterium phage FF47 | 47724 | 58.637 | Mycobacterium | Group I | Mapvirus | Mapvirus | Alphabravovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium avium subsp. paratuberculosis ATCC19698 | High-quality | High-quality | 98.950 | AAI-based (high-confidence) | lytic | ||||
| NC_021067 | Vibrio phage helene 12B3 | 135982 | 37.584 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio splendidus 12B3 | High-quality | High-quality | 99.360 | AAI-based (high-confidence) | lytic | ||||
| NC_021068 | Vibrio phage douglas 12A4 | 57611 | 38.956 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio fischeri 12A4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_021070 | Vibrio phage martha 12B12 | 33277 | 45.755 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio splendidus 12B12 | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | lytic | ||||
| NC_021071 | Cyanophage P-RSM1 | 177211 | 40.194 | Prochlorococcus | Group I | Emcearvirus | Emcearvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus MIT9303 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_021072 | Synechococcus phage Syn30 | 178807 | 39.948 | Synechococcus | Group I | Leucotheavirus | Leucotheavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_021073 | Vibrio phage henriette 12B8 | 107218 | 40.980 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio splendidus 12B8 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |