INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_019456 | Lactobacillus phage JCL1032 | 49433 | 44.246 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus delbrueckii subsp. lactis | High-quality | High-quality | 94.180 | AAI-based (high-confidence) | temperate | integrase orf_34;antirepressor orf_38 | |||
| NC_019457 | Vibrio phage CP-T1 | 44492 | 45.415 | Vibrio | Group I | Comeauvirus | Comeauvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae ElTor | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_019485 | Enterobacter phage EcP1 | 59080 | 36.875 | Enterobacter | Group I | Eceepunavirus | Eceepunavirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter cloacae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_019486 | Lactobacillus phage LF1 | 42606 | 45.005 | Lactobacillus | Group I | Lafunavirus | Lafunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_26;antirepressor orf_37 | |||
| NC_019487 | Bacillus phage SP-10 | 143986 | 40.487 | Bacillus | Group I | Spounavirinae | Unclassified | Spounavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.800 | AAI-based (high-confidence) | lytic | ||||
| NC_019488 | Salmonella phage RE2010 | 34117 | 51.021 | Salmonella | Group I | Felsduovirus | Felsduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis str. LK5 | High-quality | High-quality | 97.670 | AAI-based (high-confidence) | temperate | integrase orf_2 | |||
| NC_019489 | Lactobacillus phage Sha1 | 41726 | 40.605 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_35;cro orf_41;antirepressor orf_42 | |||
| NC_019490 | Riemerella phage RAP44 | 49329 | 34.740 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella anatipestifer | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_15;antirepressor orf_42 | |||
| NC_019496 | Clostridium phage phiCP26F | 39188 | 30.262 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_25;antirepressor orf_34;antirepressor orf_45 | |||
| NC_019500 | Escherichia phage Bp7 | 168066 | 39.493 | Escherichia | Group I | Dhakavirus | Dhakavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O78.A | High-quality | High-quality | 98.870 | AAI-based (high-confidence) | lytic |