INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_011318 | Clostridium phage phiCP39-O | 38753 | 30.421 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | High-quality | High-quality | 99.100 | AAI-based (high-confidence) | temperate | antirepressor orf_25;antirepressor orf_34;antirepressor orf_45 | |||
| NC_011344 | Staphylococcus phage phi2958PVL | 47342 | 33.040 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_7;antirepressor orf_9;integrase orf_31 | |||
| NC_011356 | Enterobacteria phage YYZ-2008 | 54896 | 51.115 | Enterobacteria | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_24;cro orf_25;antirepressor orf_46;antirepressor orf_68 | |||
| NC_011357 | Stx2-converting phage 1717 | 62147 | 50.915 | Unspecified | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;cro orf_24;cro orf_25;antirepressor orf_39;antirepressor orf_79 | |||
| NC_011373 | Pseudomonas phage PAJU2 | 46872 | 56.264 | Pseudomonas | Group I | Detrevirus | Detrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_32 | |||
| NC_011398 | Clostridioides phage phiCD27 | 50930 | 29.327 | Clostridioides | Group I | Colneyvirus | Colneyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridioides difficile | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_44;antirepressor orf_48 | |||
| NC_011399 | Ralstonia phage RSM3 | 8929 | 59.648 | Ralstonia | Group II | Habenivirus | Habenivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_011421 | Bacillus phage SPO1 | 132562 | 39.965 | Bacillus | Group I | Okubovirus | Okubovirus | Spounavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis | High-quality | High-quality | 90.410 | AAI-based (high-confidence) | lytic | ||||
| NC_011523 | Bacillus phage AP50 | 14398 | 38.651 | Bacillus | Group I | Betatectivirus | Betatectivirus | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Bacillus anthracis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_011534 | Kluyvera phage Kvp1 | 39472 | 48.642 | Kluyvera | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Kluyvera cryocrescens | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |