INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_009234 | Burkholderia phage phiE202 | 35741 | 65.429 | Burkholderia | Group I | Tigrvirus | Tigrvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia thailandensis | High-quality | High-quality | 95.400 | AAI-based (high-confidence) | temperate | integrase orf_9 | |||
| NC_009235 | Burkholderia phage phi644-2 | 48674 | 60.449 | Burkholderia | Group I | Stanholtvirus | Stanholtvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei | High-quality | High-quality | 92.290 | AAI-based (high-confidence) | lytic | ||||
| NC_009236 | Burkholderia phage phiE12-2 | 36690 | 64.617 | Burkholderia | Group I | Duodecimduovirus | Duodecimduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia pseudomallei | High-quality | High-quality | 98.630 | AAI-based (high-confidence) | lytic | ||||
| NC_009237 | Burkholderia phage phiE255 | 37446 | 63.051 | Burkholderia | Group I | Bcepmuvirus | Bcepmuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia thailandensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_37 | |||
| NC_009382 | Ralstonia phage RSA1 | 38760 | 65.348 | Ralstonia | Group I | Aresaunavirus | Aresaunavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 98.760 | AAI-based (high-confidence) | temperate | integrase orf_52 | |||
| NC_009447 | Burkholderia phage BcepGomr | 52414 | 56.294 | Burkholderia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cepacia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_009452 | Acidianus bottle-shaped virus | 23814 | 34.564 | Acidianus | Unclassified | Bottigliavirus | Bottigliavirus | Unclassified | Ampullaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Acidianus convivator | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_009514 | Enterobacteria phage cdtI | 47021 | 49.116 | Enterobacteria | Group I | Dotonborivirus | Dotonborivirus | Wollmanvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | temperate | integrase orf_28;cro orf_36 | |||
| NC_009526 | Staphylococcus phage 80alpha | 43864 | 34.103 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RN10359 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_6;cro orf_7;antirepressor orf_8;integrase orf_37 | |||
| NC_009531 | Synechococcus phage Syn5 | 46214 | 54.970 | Synechococcus | Group I | Voetvirus | Voetvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH 8109 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_16 |