INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_007824 | Escherichia phage ID62 | 6051 | 44.935 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 99.380 | AAI-based (high-confidence) | unknown | ||||
| NC_007825 | Escherichia phage ID52 | 5538 | 45.865 | Escherichia | Group II | Gequatrovirus | Gequatrovirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 95.780 | AAI-based (high-confidence) | unknown | ||||
| NC_007827 | Escherichia phage NC29 | 6259 | 44.352 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_007856 | Enterobacteria phage ID18 | 5486 | 45.224 | Enterobacteria | Group II | Gequatrovirus | Gequatrovirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Escherichia coli | High-quality | High-quality | 95.190 | AAI-based (high-confidence) | unknown | ||||
| NC_007902 | Sodalis phage phiSG1 | 52162 | 50.826 | Sodalis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sodalis glossinidius str. 'morsitans' | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_10;integrase orf_43;parA orf_63 | |||
| NC_007914 | His 1 virus | 14462 | 38.854 | Unspecified | Unclassified | Salterprovirus | Salterprovirus | Unclassified | Halspiviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Haloarcula hispanica | Low-quality | Genome-fragment | 34.410 | HMM-based (lower-bound) | lytic | ||||
| NC_007917 | Clostridium phage phi CD119 | 53325 | 28.773 | Clostridium | Group I | Lubbockvirus | Lubbockvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_6;integrase orf_47;antirepressor orf_85 | |||
| NC_007918 | His2 virus | 16067 | 40.368 | Unspecified | Group II | Gammapleolipovirus | Gammapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Haloarcula hispanica | Low-quality | Genome-fragment | 38.230 | HMM-based (lower-bound) | lytic | ||||
| NC_007924 | Lactobacillus phage KC5a | 38239 | 36.897 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus gasseri | High-quality | High-quality | 97.990 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_16 | |||
| NC_007967 | Streptomyces phage mu1/6 | 38194 | 71.194 | Streptomyces | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces aureofaciens | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_9 |