INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_004305 | Lactobacillus phage phig1e | 42259 | 43.061 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_8 | |||
| NC_004306 | Fibrovirus fs1 | 6340 | 43.423 | Unspecified | Group II | Fibrovirus | Fibrovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae O139 | Medium-quality | Genome-fragment | 89.950 | AAI-based (high-confidence) | lytic | ||||
| NC_004313 | Salmonella phage ST64B | 40149 | 51.015 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_27 | |||
| NC_004333 | Burkholderia phage Bcep781 | 48247 | 63.330 | Burkholderia | Group I | Naesvirus | Naesvirus | Mascarenevirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cepacia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_004348 | Salmonella phage ST64T | 40679 | 47.523 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | temperate | integrase orf_3;integrase orf_20;cro orf_26;antirepressor orf_27 | |||
| NC_004456 | Vibrio phage VHML | 43198 | 50.618 | Vibrio | Group I | Oonoonbavirus | Oonoonbavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio harveyi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_004462 | Thermus virus IN93 | 19604 | 65.936 | Thermus | Group I | Hukuchivirus | Hukuchivirus | Unclassified | Matsushitaviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Thermus thermophilus TZ2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;integrase orf_32 | |||
| NC_004466 | Pseudomonas phage PaP3 | 45503 | 52.227 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_004584 | Streptococcus phage 315.1 | 39538 | 37.802 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pyogenes MGAS315 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_4;antirepressor orf_8;immunity orf_22;integrase orf_25 | |||
| NC_004585 | Streptococcus phage 315.2 | 41072 | 38.255 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pyogenes MGAS315 | High-quality | High-quality | 98.870 | AAI-based (high-confidence) | temperate | integrase orf_1 |