INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_003324 | Sinorhizobium phage PBC5 | 57416 | 61.486 | Sinorhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium meliloti | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_003327 | Vibrio phage VSK | 6882 | 43.723 | Vibrio | Group II | Fibrovirus | Fibrovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cholerae O139 | High-quality | High-quality | 97.470 | AAI-based (high-confidence) | lytic | ||||
| NC_003345 | Halorubrum phage HF2 | 77672 | 55.849 | Halorubrum | Group I | Haloferacalesvirus | Haloferacalesvirus | Unclassified | Hafunaviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum coriense | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_74 | |||
| NC_003356 | Enterobacteria phage phiP27 | 42575 | 49.351 | Enterobacteria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 97.430 | AAI-based (high-confidence) | temperate | integrase orf_1 | |||
| NC_003387 | Mycobacterium phage TM4 | 52797 | 68.114 | Mycobacterium | Group I | Timquatrovirus | Timquatrovirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium avium | High-quality | High-quality | 93.580 | AAI-based (high-confidence) | temperate | cro orf_40 | |||
| NC_003390 | Synechococcus phage P60 | 46675 | 53.285 | Synechococcus | Group I | Tiilvirus | Tiilvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7805 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_003438 | Spiroplasma phage 4 | 4421 | 32.052 | Spiroplasma | Group II | Spiromicrovirus | Spiromicrovirus | Unclassified | Alphagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_003444 | Enterobacteria phage SfV | 37074 | 50.769 | Enterobacteria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri | High-quality | High-quality | 97.000 | AAI-based (high-confidence) | temperate | integrase orf_26;cro orf_34 | |||
| NC_003460 | Propionibacterium phage B5 | 5804 | 64.283 | Propionibacterium | Group II | Bifilivirus | Bifilivirus | Unclassified | Paulinoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Propionibacterium freudenreichii | Medium-quality | Genome-fragment | 77.120 | AAI-based (medium-confidence) | lytic | ||||
| NC_003524 | Clostridium phage phi3626 | 33507 | 28.382 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | High-quality | High-quality | 98.590 | AAI-based (high-confidence) | temperate | integrase orf_23;integrase orf_47 |