INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_002628 | Methanothermobacter phage psiM100 | 31007 | 45.745 | Methanothermobacter | Group I | Psimunavirus | Psimunavirus | Unclassified | Leisingerviridae | Methanobavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_3 | |||
| NC_002643 | Bdellovibrio phage phiMH2K | 4594 | 46.104 | Bdellovibrio | Group II | Bdellomicrovirus | Bdellomicrovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Bdellovibrio bacteriovorus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | unknown | ||||
| NC_002649 | Bacillus phage GA1 | 21129 | 34.654 | Bacillus | Group I | Gaunavirus | Gaunavirus | Tatarstanvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_002656 | Mycobacterium phage Bxb1 | 50550 | 63.650 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis | High-quality | High-quality | 97.380 | AAI-based (high-confidence) | temperate | integrase orf_34;immunity orf_67 | |||
| NC_002661 | Staphylococcus phage phiSLT | 42942 | 33.312 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_1;cro orf_7;antirepressor orf_9;integrase orf_37 | |||
| NC_002666 | Lactococcus phage bIL285 | 35538 | 35.188 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. lactis IL1403 | High-quality | High-quality | 99.360 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_6 | |||
| NC_002667 | Lactococcus phage bIL286 | 41834 | 35.323 | Lactococcus | Group I | Sandinevirus | Sandinevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. lactis Il1403 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_5;antirepressor orf_6 | |||
| NC_002668 | Lactococcus phage bIL309 | 36949 | 35.679 | Lactococcus | Group I | Sandinevirus | Sandinevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. lactis Il1403 | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | integrase orf_1;antirepressor orf_9 | |||
| NC_002700 | Acinetobacter phage AP205 | 4268 | 43.861 | Acinetobacter | Group IV | Apeevirus | Apeevirus | Unclassified | Duinviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Acinetobacter genomosp. 16 | High-quality | High-quality | 99.480 | HMM-based (lower-bound) | unknown | ||||
| NC_002703 | Lactococcus phage Tuc2009 | 38347 | 36.222 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 98.400 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_3;cro orf_4;antirepressor orf_5 |