INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MZ443789 | Erwinia phage pEa_SNUABM_36 | 261689 | 49.168 | Erwinia | Group I | Alexandravirus | Alexandravirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | High-quality | High-quality | 98.760 | AAI-based (high-confidence) | Alexandravirus | Alexandravirus SNUABM35 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_204 |
| MZ444140 | Pseudomonas phage PA7 | 282378 | 36.818 | Pseudomonas | Group I | Phikzvirus | Phikzvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Phikzvirus | Phikzvirus SL2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ447858 | Vibrio phage BUCT194 | 73099 | 38.477 | Vibrio | Group I | Varunavirus | Varunavirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio alginolyticus 1651 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Varunavirus | Varunavirus BUCT194 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ447863 | Microcystis phage Mea-Yong924-1 | 40325 | 48.317 | Microcystis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microcystis sp. | Medium-quality | Genome-fragment | 88.820 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_54 |
| MZ456037 | Microbacterium phage Pickles13 | 39237 | 67.844 | Microbacterium | Group I | Appavirus | Appavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Appavirus | Appavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_7 |
| MZ456038 | Gordonia phage Shlim410 | 53182 | 65.603 | Gordonia | Group I | Howevirus | Howevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Howevirus | Howevirus howe | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_35;integrase orf_38;immunity orf_43;antirepressor orf_47 |
| MZ456039 | Gordonia phage Samman98 | 47548 | 66.491 | Gordonia | Group I | Beenievirus | Beenievirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.780 | AAI-based (high-confidence) | Beenievirus | Beenievirus samman98 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;integrase orf_39;immunity orf_43;antirepressor orf_46 |
| MZ462995 | Stappia phage SI01 | 44247 | 58.298 | Stappia | Group I | Songlingvirus | Songlingvirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stappia indica | Complete | High-quality | 100.000 | DTR (high-confidence) | Songlingvirus | Songlingvirus SI01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ474488 | Phage blackswan219-6 | 6732 | 56.447 | Unspecified | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 97.440 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| MZ474489 | Phage blackswan219-1 | 7703 | 56.549 | Unspecified | Group II | Nigolovirus | Nigolovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |